aDVANCES IN SYSTEMS AND SYNTHETIC BIOLOGY
Modelling Complex Biological Systems in the Context of Genomics
Thematic Research School
    March 13th to 17th 2017, Lyon  
INRIA INSA-Lyon

PROGRAMME

Monday March 13th 2017 - Cell-cell interactions: Dynamical Systems Biology & Consortia

08:30 - 08:45 Registration
08:45 - 09:00 Thematic School presentation
09:00 - 10:30 Noisy and dynamic gene regulation at the single cell level
  James LOCKE, Sainsbury Laboratory Cambridge, University of Cambridge, UK
10:30 - 11:00 Coffee Break
11:00 - 12:30 Dynamics and evolution of metabolic interactions in microbial ecosystems
  Daniel SEGRÉ, Dynamics and evolution of biochemical networks, Boston U., US
12:30 - 14:00 Lunch
14:00 - 14:30 Discussions with today's speakers
14:30 - 16:00 Student workshop (I)
16:00 - 16:30 Coffee Break
16:30 - 18:00 Student workshop (II)
18:00 - 19:30 Poster Session
20:00 - 21:00 Dinner
21:00 - 22:00 Poster Session

Tuesday March 14th 2017 - Cell-cell interactions: SynBio of cell-cell communications & Tissue mechanical transduction

09:00 - 10:30 Synthetic cell-cell communications mimicking multicellular development
  Miki EBISUYA, Lab. for Reconstitutive Developmental Biology, RIKEN Quantitative Biology Center, Kobe, JP
10:30 - 11:00 Coffee Break
11:00 - 12:30 Synthetic Biology and Biofabrication for Conveyance of Molecular Communication
  William E. BENTLEY, Fishell Inst. of biomedical devices, U. Maryland, US
12:30 - 14:00 Lunch
14:00 - 14:30 Discussions with today's speakers
14:30 - 16:30 Workshop: metabolic networks reconstruction
  Claudine MEDIGUE & David VALLENET, UMR 8030 CEA/Genoscope - CNRS - Univ. Évry, F
16:30 - 17:00 Coffee Break
17:00 - 19:00 Workshop: Entity-centered Simulations
  Patrick AMAR, Sys2Diag, CNRS / LRI, Univ. Paris-Sud, F
19:30 - 20:30 Dinner

Wednesday March 15th 2017 - Cell-cell interactions: Microbiome

09:00 - 10:30 In silico and in vitro analysis of resource allocation in biofilm consortia
  Ross CARLSON, Center for biofilm engineering, Montana State U., Bozeman, US
10:30 - 11:00 Coffee Break
11:00 - 12:30 Understanding functions and interactions of plant microbiomes
  Gabriele BERG, Institute of Environmental Biotechnology (Head), TU Graz, AT
12:30 - 14:00 Lunch
14:00 - 14:30 Discussions with today's speakers
14:30 - 17:30 Workshop: metabolism modelling (I)
  Jean-Pierre MAZAT, Univ. Bordeaux 2, F
14:30 - 16:30 Workshop: Detecting genome regularities with GREAT
  Costas BOUYIOUKOS, Epigenetics and cell fate, Univ Paris-Diderot, F
17:30 - 19:30 Free time
19:30 - 20:30 Dinner

Thursday March 16th 2017 - Metabolism related to cell-cell interactions & Computational approaches

09:00 - 10:30 Kinetic Modeling of Liver Metabolism
  Hermann-Georg HOLZHUTTER, Inst. of Biochemistry, Charité-Universitätsmedizin Berlin, DE
10:30 - 11:00 Coffee Break
11:00 - 12:30 Petri nets for modeling biochemical systems
  Ina KOCH, Molecular Bioinformatics, Goethe U. Frankfurt, DE
12:30 - 14:00 Lunch
14:00 - 14:30 Discussions with today's speakers
14:30 - 16:30 Workshop: Logical Approaches
  Gilles BERNOT, I3S, Univ. Nice, F
14:30 - 16:30 Workshop: FindPath and RetroPath: Solutions for in silico design of metabolic pathways
  Pablo CARBONELL & Stéphanie HEUX, iSSB, Evry, F & Synbiochem, Univ. Manchester, UK and LISBP, INSA Toulouse, F
16:30 - 17:00 Coffee Break
16:15 - 19:15 Workshop: metabolism modelling (II)
  Jean-Pierre MAZAT, Univ. Bordeaux 2, F
17:00 - 19:00 Workshop: Design of artificial gene regulation networks with fuzzy logic approach
  Morgan MADEC, Telecom Physique Strasbourg, Illkirch, F
19:30 - 21:00 Dinner
21:00 - 22:00 New Mediums of Life
  Orkan TELHAN, School of Design, U. of Pennsylvania, Philadelphia, US

Friday March 17th 2017 - Metabolism related to cell-cell interactions

09:00 - 10:30 Metabolic flexibility of pancreatic cancer
  Sophie VASSEUR, Centre de recherche en Cancérologie de Marseille, Marseille, FR
10:30 - 11:00 Coffee Break
11:00 - 12:30 Classifying tumours by RNA expression patterns: Hallmarks, signalling pathways and metabolic pathways across cancers
  Elke K. MARKERT, Integrative Cancer Metabolism, Inst. of Cancer Sciences, U. Glasgow, UK
12:30 - 14:00 Lunch
14:00 - 14:30 Discussions with today's speakers